Image analysis

The Wolfson Bioimaging Facility promotes quantitative microscopy across all imaging modes by providing access and support for advanced image processing and analysis.

Image analysis courses:

ImageJ/Fiji Level 1: Watch on YouTube
ImageJ/Fiji Level 2: Watch on YouTube
CellProfiler: Slides on GitHub
MATLAB: Slides on GitHub

Facility support staff offer one-to-one assistance and training with a range of commercial software packages and freeware. These are all available on workstations (PDF, 1,507kB) in the Wolfson Bioimaging Facility’s data analysis suite (room C27/U), while some can also be downloaded on any PC.  A dedicated EM analysis PC comes equipped with a touch-sensitive monitor for direct annotation/curation of models.

Our regular half day image analysis training workshops are currently suspended due to Covid-19 but online versions are available.  Both ImageJ/Fiji Level 1 and 2 courses can be viewed on YouTube and the full lecture materials for all courses (ImageJ/Fiji, CellProfiler and MATLAB) are available via GitHub.

Researchers requiring advanced LM analysis can request assistance with development of custom tools by contacting our image processing and analysis specialist Stephen Cross, who collaborates on several research projects

Assistance with advanced EM analysis can be requested by contacting the EM team and/or completing a request form on PPMS.

A list of the most widely used and supported programmes with the Wolfson Bioimaging Facility can be found below:

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