Image analysis
The Wolfson Bioimaging Facility promotes quantitative microscopy across all imaging modes by providing access and support for advanced image processing and analysis.
ImageJ/Fiji Level 1: Watch on YouTube
ImageJ/Fiji Level 2: Watch on YouTube
CellProfiler: Slides on GitHub
MATLAB: Slides on GitHub
Facility support staff offer one-to-one assistance and training with a range of commercial software packages and freeware. These are all available on workstations in the Wolfson Bioimaging Facility’s data analysis suite (room C27/U), while some can also be downloaded on any PC. A dedicated EM analysis PC comes equipped with a touch-sensitive monitor for direct annotation/curation of models.
We run regular in-person half day image analysis training workshops. For details of upcoming sessions, please see our courses page. Both ImageJ/Fiji Level 1 and 2 courses can be viewed on YouTube and the full lecture materials for all courses (ImageJ/Fiji, CellProfiler and MATLAB) are available via our GitHub.
Researchers requiring advanced LM analysis can request assistance with development of custom tools by contacting our image processing and analysis specialist Stephen Cross, who collaborates on several research projects.
Assistance with advanced EM analysis can be requested by contacting the EM team and/or completing a request form on PPMS.
A list of the most widely used and supported programmes with the Wolfson Bioimaging Facility can be found here