
Professor Dek Woolfson
B.A.(Oxon.), Ph.D.(Cantab.)
Expertise
Current positions
Professor of Chemistry and Biochemistry
School of Chemistry
Contact
Press and media
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Research interests
The primary basic research interests of the group are: (A) the informational aspect of the protein-folding problem; that is, how does the sequence of a protein determine its active, three-dimensional structure or fold? And (B), how can we use this information to design completely new proteins from scratch? In addition, we design proteins for applications in synthetic biology and medicine.
We tackle these problems using the following multi-disciplinary approach:
- We use bioinformatics to garner sequence-to-structure relationships from protein sequence and structural databases.
- We test the relationships ("rules for protein folding") that we find in two ways: (a) through ab initio protein-structure prediction; and (b) via rational protein design, where we engineer natural protein structures, or design new ones completely from scratch (so-called de novo design).
- We then test our engineered and design proteins experimentally using biophysical methods. The peptides and proteins are made either by peptide synthesis, or via recombinant DNA methods and the expression of synthetic genes. The products and then characterised using methods including: solution-phase biophysics (CD, FT-IR and fluorescence spectroscopy, AUC and ITC); high-resolution structural biology (NMR spectroscopy and X-ray crystallography); and microscopy (EM, AFM and light microscopy).
- Finally, we explore potential applications of some the engineered and designed proteins in the burgeoning fields of bionanotechnology and synthetic biology.
Professor Woolfson is a supervisor in the EPSRC Centre for Doctoral Training in Chemical Synthesis
Projects and supervisions
Research projects
Generalised Photocatalysis by Enzymes
Principal Investigator
Managing organisational unit
School of ChemistryDates
01/12/2022 to 30/11/2027
BBI Internationalisatoin Programme 2022/23
Principal Investigator
Managing organisational unit
School of ChemistryDates
01/11/2022 to 31/10/2023
Mechanism and design of a pH sensor at the organelle-cytoskeleton interface
Principal Investigator
Managing organisational unit
School of ChemistryDates
01/02/2022 to 31/01/2025
8083 BrisEngBio - Exemplar Project 1
Principal Investigator
Managing organisational unit
School of ChemistryDates
31/01/2022 to 30/01/2024
Thesis supervisions
Design, synthesis and characterisation of new protein folds
Supervisors
Designing cell-penetrating peptides for subcellular applications
Supervisors
From peptide oligomers to single-chain proteins
Supervisors
Design, characterisation and applications of de novo proteins
Supervisors
The Design of Heteromeric and Metal-binding Alpha-Helical Barrels
Supervisors
Engineering of polychromatic photosystems for expanded solar energy conversion
Supervisors
Utilising de novo-designed α-helical peptides as a modular cytoscaffold for primary neurons and sensor for small-molecules
Supervisors
Assembly and functionalisation of membraneless organelles from de novo designed proteins
Supervisors
De novo designed protein-protein interaction domains for synthetic biology applications in cells
Supervisors
Protein evolution and the early history of life
Supervisors
Publications
Selected publications
03/05/2013Self-assembling cages from coiled-coil peptide modules
Science
Rational design and application of responsive α-helical peptide hydrogels
Nature Materials
n→π* interactions in proteins
Nature Chemical Biology
A de novo peptide hexamer with a mutable channel
Nature Chemical Biology
Recent publications
27/02/2025Computational protein design
Nature Reviews Methods Primers
Confinement and Catalysis within De Novo Designed Peptide Barrels
Journal of the American Chemical Society
Interface flexibility controls the nucleation and growth of supramolecular networks
Nature Chemistry
Maturation and conformational switching of a de novo designed phase-separating polypeptide
A de novo designed coiled coil-based switch regulates the microtubule motor kinesin-1
Nature Chemical Biology