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Publication - Dr Daniele Avitabile

    Stripe to spot transition in a plant root hair initiation model

    Citation

    Breña-Medina, VF, Avitabile, D, Champneys, AR & Ward, MJ, 2015, ‘Stripe to spot transition in a plant root hair initiation model’. SIAM Journal on Applied Mathematics, vol 75., pp. 1090-1119

    Abstract

    A generalized Schnakenberg reaction-diffusion system with source and loss terms and a spatially dependent coefficient of the nonlinear term is studied both numerically and analytically in two spatial dimensions. The system has been proposed as a model of hair initiation in the epidermal cells of plant roots. Specifically the model captures the kinetics of a small G-protein ROP, which can occur in active and inactive forms, and whose activation is believed to be mediated by a gradient of the plant hormone auxin. Here the model is made more realistic with the inclusion of a transverse coordinate. Localized stripe-like solutions of active ROP occur for high enough total auxin concentration and lie on a complex bifurcation diagram of single- and multipulse solutions. Transverse stability computations, confirmed by numerical simulation show that, apart from a boundary stripe, these one-dimensional (1D) solutions typically undergo a transverse instability into spots. The spots so formed typically drift and undergo secondary instabilities such as spot replication. A novel twodimensional (2D) numerical continuation analysis is performed that shows that the various stable hybrid spot-like states can coexist. The parameter values studied lead to a natural, singularly perturbed, so-called semistrong interaction regime. This scaling enables an analytical explanation of the initial instability by describing the dispersion relation of a certain nonlocal eigenvalue problem. The analytical results are found to agree favorably with the numerics. Possible biological implications of the results are discussed.

    Full details in the University publications repository