
Dr Simon Cheung
PhD, MPhil, BSc
Expertise
I am a microbial ecologist specialising in molecular and bioinformatics approaches to investigate the dynamics, drivers, and functional roles of microbial communities in natural and host-associated environments.
Current positions
Senior Research Associate
School of Earth Sciences
Contact
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Biography
Research interests
My research focuses on the ecology of microorganisms inhabiting both natural and host-associated environments. I utilise amplicon sequencing (16S, 18S, and ITS) and shotgun metagenomics to characterise microbial communities and address key ecological questions through advanced bioinformatics and statistical analyses.
Publications
Selected publications
25/08/2026Structure and function of the peatland prokaryotic microbiome
Environmental Microbiome
Development of the early-life gut microbiome and associations with eczema in a prospective Chinese cohort
mSystems
Community structure, dynamics and interactions of bacteria, archaea and fungi in subtropical coastal wetland sediments
Scientific Reports
Recent publications
25/08/2026Structure and function of the peatland prokaryotic microbiome
Environmental Microbiome
Environmental indications and controls of bacterial membrane lipids in a tropical peatland from Panama
Organic Geochemistry
Alterations in faecal microbiome and resistome in Chinese international travellers: a metagenomic analysis
Journal of Travel Medicine
Development of the early-life gut microbiome and associations with eczema in a prospective Chinese cohort
mSystems
Extent of Oral–Gut Transmission of Bacterial and Fungal Microbiota in Healthy Chinese Adults
Microbiology Spectrum



