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Publication - Dr Raphael Clifford

    Pattern matching under polynomial transformation

    Citation

    Butman, A, Peter, C, Clifford, R, Jalsenius, MT, Lewenstein, N, Porat, B & Porat, E, 2013, ‘Pattern matching under polynomial transformation’. Siam journal on computing, vol 42., pp. 611-633

    Abstract

    We consider a class of pattern matching problems where a normalising transformation is applied at every alignment. Normalised pattern matching plays a key role in fields as diverse as image processing and musical information processing where application specific transformations are often applied to the input. By considering the class of polynomial transformations of the input, we provide fast algorithms and the first lower bounds for both new and old problems. Given a pattern of length m and a longer text of length n where both are assumed to contain integer values only, we first show O(n log m) time algorithms for pattern matching under linear transformations even when wildcard symbols can occur in the input. We then show how to extend the technique to polynomial transformations of arbitrary degree. Next we consider the problem of finding the minimum Hamming distance under polynomial transformation. We show that, for any epsilon>0, there cannot exist an O(n m^(1-epsilon)) time algorithm for additive and linear transformations conditional on the hardness of the classic 3SUM problem. Finally, we consider a version of the Hamming distance problem under additive transformations with a bound k on the maximum distance that need be reported. We give a deterministic O(nk log k) time solution which we then improve by careful use of randomisation to O(n sqrt(k log k) log n) time for sufficiently small k. Our randomised solution outputs the correct answer at every position with high probability.

    Full details in the University publications repository