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Unit information: Computational Genomics and Bioinformatics Algorithms in 2021/22

Unit name Computational Genomics and Bioinformatics Algorithms
Unit code EMATM0004
Credit points 10
Level of study M/7
Teaching block(s) Teaching Block 2 (weeks 13 - 24)
Unit director Professor. Cristianini
Open unit status Not open
Pre-requisites

An understanding of basic probability theory, and elementary programming skills are essential. Prior knowledge of Matlab is helpful but not essential.

Co-requisites

None

School/department Department of Engineering Mathematics
Faculty Faculty of Engineering

Description including Unit Aims

The unit will focus on case studies of analysis of single genomes. It covers: gene finding; genome evolution; gene expression analysis; sequence alignment; hidden Markov models; phylogenics.

Aim:

To introduce students to practical tasks of genome analysis, based on real case studies.

Intended Learning Outcomes

  1. Basic analysis of genomic data (DNA and AA sequences)
  2. Gene finding, sequence alignments, inference of phylogenetic tree
  3. Experience using real world data
  4. Using standard online tools and datasets and databases
  5. Reading scientific papers
  6. Writing a professional report
  7. Discussing the merits of different methods

Teaching Information

Teaching will be delivered through a combination of synchronous and asynchronous sessions, including lectures, practical activities supported by drop-in sessions or online computer laboratories and problem sheets.

Assessment Information

1 Summative Assessment, 100% - Coursework. This will assess all ILOs.

Resources

If this unit has a Resource List, you will normally find a link to it in the Blackboard area for the unit. Sometimes there will be a separate link for each weekly topic.

If you are unable to access a list through Blackboard, you can also find it via the Resource Lists homepage. Search for the list by the unit name or code (e.g. EMATM0004).

How much time the unit requires
Each credit equates to 10 hours of total student input. For example a 20 credit unit will take you 200 hours of study to complete. Your total learning time is made up of contact time, directed learning tasks, independent learning and assessment activity.

See the Faculty workload statement relating to this unit for more information.

Assessment
The Board of Examiners will consider all cases where students have failed or not completed the assessments required for credit. The Board considers each student's outcomes across all the units which contribute to each year's programme of study. If you have self-certificated your absence from an assessment, you will normally be required to complete it the next time it runs (this is usually in the next assessment period).
The Board of Examiners will take into account any extenuating circumstances and operates within the Regulations and Code of Practice for Taught Programmes.

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