Selected Publications

Here are some examples of recent publications which have included work performed within the facility.

1:  Dissecting the genetic basis of wheat blast resistance in the Brazilian wheat cultivar BR 18-Terena
Rachel Goddard, Andrew Steed, Catherine Chinoy, Jéssica Rosset Ferreira, Pedro Luiz Scheeren, João Leodato Nunes Maciel, Eduardo Caierão, Gisele Abigail Montan Torres, Luciano Consoli, Flavio Martins Santana, José Mauricio Cunha Fernandes, James Simmonds, Cristobal Uauy, James Cockram, Paul Nicholson
BMC Plant Biol. 2020; 20: 398.  Published online 2020 Aug 27. doi: 10.1186/s12870-020-02592-0
PMCID: PMC7451118

2:  Inflammatory pathways are central to posterior cerebrovascular artery remodelling prior to the onset of congenital hypertension
Dawid Walas, Karol Nowicki-Osuch, Dominic Alibhai, Eva von Linstow Roloff, Jane Coghill, Christy Waterfall, Julian FR Paton
J Cereb Blood Flow Metab. 2019 Sep; 39(9): 1803–1817.  Published online 2018 Apr 13. doi: 10.1177/0271678X18769180
PMCID: PMC6724458

3:  Conversion of array‐based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (Triticum aestivum)
Amanda J. Burridge, Paul A. Wilkinson, Mark O. Winfield, Gary L. A. Barker, Alexandra M. Allen, Jane A. Coghill, Christy Waterfall, Keith J. Edwards
Plant Biotechnol J. 2018 Apr; 16(4): 867–876.  Published online 2017 Oct 23. doi: 10.1111/pbi.12834
PMCID: PMC5866950

4:  High‐density genotyping of the A.E. Watkins Collection of hexaploid landraces identifies a large molecular diversity compared to elite bread wheat
Mark O. Winfield, Alexandra M. Allen, Paul A. Wilkinson, Amanda J. Burridge, Gary L.A. Barker, Jane Coghill, Christy Waterfall, Luzie U. Wingen, Simon Griffiths, Keith J. Edwards
Plant Biotechnol J. 2018 Jan; 16(1): 165–175.  Published online 2017 Jul 28. doi: 10.1111/pbi.12757
PMCID: PMC5785351

5:  16S rRNA Next Generation Sequencing Analysis Shows Bacteria in Alzheimer’s Post-Mortem Brain
David C. Emery, Deborah K. Shoemark, Tom E. Batstone, Christy M. Waterfall, Jane A. Coghill, Tanya L. Cerajewska, Maria Davies, Nicola X. West, Shelley J. Allen
Front Aging Neurosci. 2017; 9: 195.  Published online 2017 Jun 20. doi: 10.3389/fnagi.2017.00195
PMCID: PMC5476743

6:  Recognition memory-induced gene expression in the perirhinal cortex: A transcriptomic analysis
Hannah Scott, Mark F. Rogers, Helen L. Scott, Colin Campbell, Elizabeth C. Warburton, James B. Uney
Behav Brain Res. 2017 Jun 15; 328: 1–12.  doi: 10.1016/j.bbr.2017.04.007
PMCID: PMC5469443

7:  Characterization of a Wheat Breeders’ Array suitable for high‐throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum)
Alexandra M. Allen, Mark O. Winfield, Amanda J. Burridge, Rowena C. Downie, Harriet R. Benbow, Gary L. A. Barker, Paul A. Wilkinson, Jane Coghill, Christy Waterfall, Alessandro Davassi, Geoff Scopes, Ali Pirani, Teresa Webster, Fiona Brew, Claire Bloor, Simon Griffiths, Alison R. Bentley, Mark Alda, Peter Jack, Andrew L. Phillips, Keith J. Edwards
Plant Biotechnol J. 2017 Mar; 15(3): 390–401.  Published online 2016 Nov 23. doi: 10.1111/pbi.12635
PMCID: PMC5316916

8:  RNA sequencing analysis of human podocytes reveals glucocorticoid regulated gene networks targeting non-immune pathways
Lulu Jiang, Charles C. T. Hindmarch, Mark Rogers, Colin Campbell, Christy Waterfall, Jane Coghill, Peter W. Mathieson, Gavin I. Welsh
Sci Rep. 2016; 6: 35671.  Published online 2016 Oct 24. doi: 10.1038/srep35671
PMCID: PMC5075905

9:  CerealsDB 3.0: expansion of resources and data integration
Paul A. Wilkinson, Mark O. Winfield, Gary L. A. Barker, Simon Tyrrell, Xingdong Bian, Alexandra M. Allen, Amanda Burridge, Jane A. Coghill, Christy Waterfall, Mario Caccamo, Robert P. Davey, Keith J. Edwards
BMC Bioinformatics. 2016; 17: 256.  Published online 2016 Jun 24. doi: 10.1186/s12859-016-1139-x
PMCID: PMC4919907

10:  High‐density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool
Mark O. Winfield, Alexandra M. Allen, Amanda J. Burridge, Gary L. A. Barker, Harriet R. Benbow, Paul A. Wilkinson, Jane Coghill, Christy Waterfall, Alessandro Davassi, Geoff Scopes, Ali Pirani, Teresa Webster, Fiona Brew, Claire Bloor, Julie King, Claire West, Simon Griffiths, Ian King, Alison R. Bentley, Keith J. Edwards
Plant Biotechnol J. 2016 May; 14(5): 1195–1206.  Published online 2015 Oct 15. doi: 10.1111/pbi.12485
PMCID: PMC4950041

11:  Mutation Scanning in Wheat by Exon Capture and Next-Generation Sequencing
Robert King, Nicholas Bird, Ricardo Ramirez-Gonzalez, Jane A. Coghill, Archana Patil, Keywan Hassani-Pak, Cristobal Uauy, Andrew L. Phillips
PLoS One. 2015; 10(9): e0137549.  Published online 2015 Sep 3. doi: 10.1371/journal.pone.0137549
PMCID: PMC4559439

12:  Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox family
Stephen Pearce, Alison K Huttly, Ian M Prosser, Yi-dan Li, Simon P Vaughan, Barbora Gallova, Archana Patil, Jane A Coghill, Jorge Dubcovsky, Peter Hedden, Andrew L Phillips
BMC Plant Biol. 2015; 15: 130.  Published online 2015 Jun 5. doi: 10.1186/s12870-015-0520-7
PMCID: PMC4455330

13:  CerealsDB 2.0: an integrated resource for plant breeders and scientists
Paul A Wilkinson, Mark O Winfield, Gary LA Barker, Alexandra M Allen, Amanda Burridge, Jane A Coghill, Keith J Edwards
BMC Bioinformatics. 2012; 13: 219.  Published online 2012 Sep 3. doi: 10.1186/1471-2105-13-219
PMCID: PMC3447715

14:  Cold- and light-induced changes in the transcriptome of wheat leading to phase transition from vegetative to reproductive growth
Mark O Winfield, Chungui Lu, Ian D Wilson, Jane A Coghill, Keith J Edwards
BMC Plant Biol. 2009; 9: 55.  Published online 2009 May 11. doi: 10.1186/1471-2229-9-55
PMCID: PMC2685395

15:  Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription
Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell, Keith J Edwards
BMC Genomics. 2008; 9: 475.  Published online 2008 Oct 10. doi: 10.1186/1471-2164-9-475
PMCID: PMC2584110

16:  A microarray analysis of gene expression in the free-living stages of the parasitic nematode Strongyloides ratti
Fiona J Thompson, Gary LA Barker, Louise Hughes, Clare P Wilkes, Jane Coghill, Mark E Viney
BMC Genomics. 2006; 7: 157.  Published online 2006 Jun 19. doi: 10.1186/1471-2164-7-157
PMCID: PMC1525192

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